Stem-loop mtr-MIR2592f

Accession

MI0011819

Description

Medicago truncatula mtr-MIR2592f precursor miRNA

Literature search

1 open access papers mention mtr-MIR2592f
(2 sentences)

Sequence

57181 reads, 412.0 reads per million, 111 experiments

ugggauaaauucaaaccugcaaaaCAACAGGACUCAAGCAUUUCGccaaacacuucauguuuucccuuugaaaauaauaaauuuuugugaggcuugcuuuagaugaugguauucaagugccaccgaauugagguucaauccuugacacuuaauaccuucaucuaaaccagcauaacaaaaauuuaauauuuucaaaggagaaacaugaggugcuugcgAAAUGCUUGAGUCCUGUUGUUugacaaguuugaauuaccu
.(((...(((((((((.((..(((((((((((((((((((((((((.((.(((((((((((((.((((((((((((.(((((((((((...(((.(.(((((((((.((((((.(((((.((..((.((((...))))))..)).))))))))))).)))))))))).)))...))))))))))).)))))))))))).))))))))))))).)))))))))))))))))))))))))))..)).))))))))).)))

Structure

u   aua         c  ca                         c  a             c            a           gag   u c         u      c     c  cc  a    g 
 ggg   aauucaaac ug  aaaCAACAGGACUCAAGCAUUUCGc aa cacuucauguuuu ccuuugaaaaua uaaauuuuugu   gcu g uuuagauga gguauu aagug ca  ga uuga  
 |||   ||||||||| ||  ||||||||||||||||||||||||| || ||||||||||||| |||||||||||| |||||||||||   ||| | ||||||||| |||||| ||||| ||  || |||| g
 ucc   uuaaguuug ac  uUUGUUGUCCUGAGUUCGUAAAgcg uu guggaguacaaag ggaaacuuuuau auuuaaaaaca   cga c aaaucuacu ccauaa uucac gu  cu aacu  
-   --a         a  ag                         -  c             a            a           aua   c -         u      -     a  uc  -    u 

Annotation confidence High

Genome context

chr3: 37671574-37671831 [+]

Mature mtr-miR2592f-5p

• Accession: MIMAT0054817
• Description: Medicago truncatula mtr-miR2592f-5p mature miRNA
• Sequence: 25 - CAACAGGACUCAAGCAUUUCG - 45
• Evidence: experimental ; unknown

Mature mtr-miR2592f-3p

• Accession: MIMAT0013272
• Description: Medicago truncatula mtr-miR2592f-3p mature miRNA
• Sequence: 219 - AAAUGCUUGAGUCCUGUUGUU - 239
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796