Dead hairpin entry

Stem-loop mtr-MIR2590e

Accession

MI0011812

Description

Medicago truncatula mtr-MIR2590e precursor miRNA

Comment

The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.

Literature search

1 open access papers mention mtr-MIR2590e
(1 sentences)

Sequence

29719 reads, 290.0 reads per million, 111 experiments

uaagaaaauuuuaagAAUGACAUGGCAGAAUAAUCACCCuuagauuuuaucaagaaauaguccugaaauuaauguuagccaauaaaaucucagucuggccggaaaucaugggugguggguguuauguauuuuuuuuauuuuuaugaaagauuaauaaaugagauugaaAUCUAAAGGUGAUUAUUGUGCCaugucauucuugaaucuuu
.((((....((((((((((((((((((.((((((((((.(((((((((.(((.((.....)).)))...................(((((((..((.((((...........)))).))..((((..(((((((.((....)).)))))))..)))).)))))))))))))))).)))))))))).)))))))))))))))))))))).

Structure

u    aaau                  G          C         aucaagaaauaguccugaaauuaauguuagccaauaa       gucuggccggaaaucauggguggugggug    gu       u  u 
 aaga    uuuaagAAUGACAUGGCA AAUAAUCACC uuagauuuu                                     aaucuca                             uuau  auuuuuu ua u
 ||||    |||||||||||||||||| |||||||||| |||||||||                                     |||||||                             ||||  ||||||| ||  
 uucu    aaguucuuacuguaCCGU UUAUUAGUGG AAUCUAaag                                     uuagagu                             aaua  uagaaag au u
u    ----                  G          A         -------------------------------------       ----------------------------a    au       u  u