Dead hairpin entry

Stem-loop mtr-MIR2590d

Accession

MI0011811

Description

Medicago truncatula mtr-MIR2590d precursor miRNA

Comment

The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.

Literature search

1 open access papers mention mtr-MIR2590d
(1 sentences)

Sequence

42546 reads, 399.0 reads per million, 111 experiments

caagaaaauuucaagAAUGACAUGGCAGAAUAAUCACCCuuagauuuuaucaagaaauagucuugaaacuaauguuagccaauaaaaucucagccuggucggaaaucaugggugguggguguuauguauuuuuuuuuaugaaagauuaauaaaugagacugaaAUCUAAAGGUGAUUAUUGUGCCaugucauucuugaaucuuu
.((((....((((((((((((((((((.((((((((((.((((((((((((((((.....))))))(((....)))..(((........(((.((((((.....)))).)).))))))((.((((.((((..(((((...)))))..)))).)))).)))))))))))).)))))))))).)))))))))))))))))))))).

Structure

c    aaau                  G          C          ucaagaaauagucuugaaacuaauguuagccaauaaaaucucagccuggucggaaaucauggguggugg  g    g    uu     a 
 aaga    uucaagAAUGACAUGGCA AAUAAUCACC uuagauuuua                                                                     gu uuau uauu  uuuuu  
 ||||    |||||||||||||||||| |||||||||| ||||||||||                                                                     || |||| ||||  ||||| u
 uucu    aaguucuuacuguaCCGU UUAUUAGUGG AAUCUAaagu                                                                     ca agua auaa  agaaa  
u    ----                  G          A          ---------------------------------------------------------------------  g    a    uu     g