Dead hairpin entry

Stem-loop mtr-MIR2590c

Accession

MI0011810

Description

Medicago truncatula mtr-MIR2590c precursor miRNA

Comment

The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.

Literature search

1 open access papers mention mtr-MIR2590c
(1 sentences)

Sequence

34312 reads, 312.0 reads per million, 111 experiments

aaaauuuuaagAAUGACAUGGCAGAAUAAUCACCCuuaaauuuuaucaauaaauagucuugaaauuaauguuagccaauaaaaucucagucuagccggaaaucauggggugguggguguuauguauuuuuuauuuaugaaagauuaauaaaugagacugaaAUCUAAAGGUGAUUAUUGUGCCauuucauucuugaauauuu
.....(((((((((((.((((((.((((((((((.(((.(((((((((.....((((((((((((..(((.((.(((.....((((((................))))))..))).)).)))..)))))..........))))))).....)))...)))))).))).)))))))))).)))))).))))))))))).....

Structure

aaaau           C      G          C   a      ---   auaaa       ----------     ua   u  g   auaaa      gucuagc 
     uuuaagAAUGA AUGGCA AAUAAUCACC uua auuuua   uca     uagucuu          gaaau  aug ua cca     aucuca       c
     ||||||||||| |||||| |||||||||| ||| ||||||   |||     |||||||          |||||  ||| || |||     ||||||        
     aaguucuuacu uaCCGU UUAUUAGUGG AAU UAaagu   agu     auuagaa          uuuua  uau gu ggu     uggggu       g
uuuau           u      G          A   C      cag   aaaua       aguauuuauu     ug   u  g   ---gg      acuaaag