Stem-loop mtr-MIR2590a

Accession

MI0011808

Description

Medicago truncatula mtr-MIR2590a precursor miRNA

Literature search

1 open access papers mention mtr-MIR2590a
(1 sentences)

Sequence

aaaauuuuaagaaugacauggcagaauaaucacccuuagauuuuaucaagaaauagucuugaaauuaauguuagccaauaaaaucucagccgaaaaucauagggugguggguguuauguauuuuuuuuuuaugaaagauuaauaaaugagacugaaAUCUAAAGGUGAUUAUUGUGCCaugucauucuugaauauuu
.....((((((((((((((((((.((((((((((.((((((((((((((((.....))))))............(((........(((.((..........)).))))))((.((((.((((..(((((....)))))..)))).)))).)))))))))))).)))))))))).)))))))))))))))))).....

Structure

aaaau                  g          c          ucaagaaauagucuugaaauuaauguuagccaauaaaaucucagccgaaaaucauaggguggugg  g    g    uu     u 
     uuuaagaaugacauggca aauaaucacc uuagauuuua                                                                 gu uuau uauu  uuuuu a
     |||||||||||||||||| |||||||||| ||||||||||                                                                 || |||| ||||  |||||  
     aaguucuuacuguaCCGU UUAUUAGUGG AAUCUAaagu                                                                 ca agua auaa  agaaa u
uuuau                  G          A          -----------------------------------------------------------------  g    a    uu     g 

Annotation confidence Not enough data

Genome context

chr8: 8885932-8886128 [+]

Mature mtr-miR2590a

• Accession: MIMAT0013261
• Description: Medicago truncatula mtr-miR2590a mature miRNA
• Sequence: 157 - AUCUAAAGGUGAUUAUUGUGCC - 178
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796