Dead hairpin entry

Stem-loop mtr-MIR2590a

Accession

MI0011808

Description

Medicago truncatula mtr-MIR2590a precursor miRNA

Comment

The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.

Literature search

1 open access papers mention mtr-MIR2590a
(1 sentences)

Sequence

40766 reads, 385.0 reads per million, 111 experiments

aaaauuuuaagAAUGACAUGGCAGAAUAAUCACCCuuagauuuuaucaagaaauagucuugaaauuaauguuagccaauaaaaucucagccgaaaaucauagggugguggguguuauguauuuuuuuuuuaugaaagauuaauAAAUGAGACUGAAAUCUAAAGGUGAuuauugugccaugucauucuugaauauuu
.....((((((((((((((((((.((((((((((.((((((((((((((((.....))))))............(((........(((.((..........)).))))))((.((((.((((..(((((....)))))..)))).)))).)))))))))))).)))))))))).)))))))))))))))))).....

Structure

aaaau                  G          C          ucaagaaauagucuugaaauuaauguuagccaauaaaaucucagccgaaaaucauaggguggugg  g    g    uu     u 
     uuuaagAAUGACAUGGCA AAUAAUCACC uuagauuuua                                                                 gu uuau uauu  uuuuu a
     |||||||||||||||||| |||||||||| ||||||||||                                                                 || |||| ||||  |||||  
     aaguucuuacuguaccgu uuauuAGUGG AAUCUAAAGU                                                                 CA AGUA Auaa  agaaa u
uuuau                  g          A          -----------------------------------------------------------------  G    A    uu     g