miRBase entry: mtr-MIR2589

Dead hairpin entry

Stem-loop mtr-MIR2589


Accession
MI0011807
Description
Medicago truncatula mtr-MIR2589 precursor miRNA
Comment
The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.


Sequence

73637 reads, 597.0 reads per million, 111 experiments
uguuggugauuaagcAAACGGUGAAGCACACAUGGAUGCcacaccugacuuuuuuauuuuuuguuaaauauauuuuuaaucccuauaaaauuaagguauuuuaaguuuuuauuccuuacaaaaauauuaugcacucaguauuagucccugcucaauucaacuauuaaaauuaaacaaauuugaauugagcagagacuaauacugagugcauaguauuuuuguaaugacuaaaacaacuauuaaaauuaaguaaggacuaaacuuaaaaugucucaAUUUUAUAGGGACUAAAAAcauauuuaacccaacaaaaaaaagucagauguggcauccacgugugcuucaccguuugcucaaucaacaacg
.((((.(((((.(((((((((((((((((((.(((((((((((.(((((((((((.......(((((((((.((((((.(((((((((((((.(((((((((((((((....((((((((((((((((((((((((((((((((((.(((((((((((((...................))))))))))))).)))))))))))))))))))))))))))))).............................))))..))))))))))))))).))))))))))))).)))))).))))))))).......))))))))))).))))))))))).))))))))))))))))))).))))).)))).

Structure
u    g     a                   A           c           auuuuuu         a      a             a               uuau    -----------------------------                              c             cuauuaaa 
 guug ugauu agcAAACGGUGAAGCACAC UGGAUGCcaca cugacuuuuuu       guuaaauau uuuuua ucccuauaaaauu agguauuuuaaguuu    uccu                             uacaaaaauauuaugcacucaguauuaguc cugcucaauucaa        a
 |||| ||||| ||||||||||||||||||| ||||||||||| |||||||||||       ||||||||| |||||| ||||||||||||| |||||||||||||||    ||||                             |||||||||||||||||||||||||||||| |||||||||||||        u
 caac acuaa ucguuugccacuucgugug accuacggugu gacugaaaaaa       caauuuaua AAAAAU AGGGAUAUUUUAa ucuguaaaauucaaa    agga                             auguuuuuaugauacgugagucauaaucag gacgaguuaaguu        u
g    a     c                   c           a           aacaacc         c      C             c               --uc    augaauuaaaauuaucaacaaaaucagua                              a             uaaacaaa