miRBase entry: mtr-MIR2585b

Dead hairpin entry

Stem-loop mtr-MIR2585b


Accession
MI0011797
Description
Medicago truncatula mtr-MIR2585b precursor miRNA
Comment
The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.


Sequence

41777 reads, 430.0 reads per million, 111 experiments
uaggggccguuuaaaaauugguccauguauucgcuaauccuugcaaacuagucuugcaaucauuaaucauuuaaaauuucaucaUUUGACCAACUUAAUCACUGCCACacauaaaauuccaauucugcccuuaagaagaugacaaaauauugaagaaagaauuggaaaccuagggguaaaauuggaauuucauguguaacagugauugacacgucaucaaauucuugacguggcagugauuaaguggggagagggacgaaauuuuaaaugauuaaacaaugcaguggugaauuguCAGGAUUAGCGAUUACAGGGACcaauuuuuaaacgaccccu
.(((((.(((((((((((((((((.((((.(((((((((((.((((((((...(((((....((((((((((((((((((.((.(((..((.((((((((((((((((((((.(((((((((((.((((((((.....................................)))))))).))))))))))).))))))....((.....))((((((.........)))))))))))))))))))).))..))).)).))))))))))))))))))....)))))))))...)))).))))))))))).)))).))))))))))))))))).)))))

Structure
u     c                 a    u           u    ---    guc     auca                  a  a   GA  A              ----------------------------------      a           c        agaagaugacaaaauau 
 agggg cguuuaaaaauuggucc ugua ucgcuaauccu gcaa   acua   uugca    uuaaucauuuaaaauuuc uc UUU  CC ACUUAAUCACUGCC                                  ACacau aaauuccaauu ugcccuua                 u
 ||||| ||||||||||||||||| |||| ||||||||||| ||||   ||||   |||||    |||||||||||||||||| || |||  || ||||||||||||||                                  |||||| ||||||||||| ||||||||                 g
 ucccc gcaaauuuuuaacCAGG ACAU AGCGAUUAGGA uguu   uggu   gacgu    aauuaguaaauuuuaaag ag gag  gg ugaauuagugacgg                                  ugugua uuuaagguuaa auggggau                 a
-     a                 G    U           C    aag    ---     aaca                  c  g   ag  g              ugcaguucuuaaacuacugcacaguuagugacaa      c           a        ccaaagguuaagaaaga