miRBase entry: mtr-MIR2585a

Dead hairpin entry

Stem-loop mtr-MIR2585a


Accession
MI0011796
Description
Medicago truncatula mtr-MIR2585a precursor miRNA
Comment
The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.


Sequence

47384 reads, 469.0 reads per million, 111 experiments
aauUAGGGGUCGUUUAAAAAUUGGUCccuguauucgcuaaucauugcaaacuaaccuugcaaucauuaaucauuuaaaauuucaucauuugaccaacuuaaucaccgccacgucacuuauuugaugacgucgcaaucacugccacacaugaaauuccaauuuugcccuuaagaagaggacaaaauauugaagaaagaauuggaacccagggguaaaauuggaauuuuauguggcguggcagugauuaaguggggagagagacgaaauuuuaaaugauuaaacaaugcaaggguaaauuacCAGGAUUAGCGAUUACAGGGACcaauuuuuaaacgaccccuaauug
((((((((((((((((((((((((((((((((.(((((((((.(((........(((((((....((((((((((((((((((.((.(((..((.((((((((((.((((((((..............((.(((.....))).))((((((((((((((((((((((((.....(.((....(((.((......)).)))....))))))))))))))))))))))))))))))))))).)))))))))).))..))).)).))))))))))))))))))....))))))).........)))))))))))).)))))))))))))))))))))))))))))))).

Structure
-                                u         a   -caaacuaa       auca                  a  a   ga  a          c        acuuauuugaugacgucgcaaucacugccac                        aagaa a  acaa   a  ga 
 aauUAGGGGUCGUUUAAAAAUUGGUCccugua ucgcuaauc uug         ccuugca    uuaaucauuuaaaauuuc uc uuu  cc acuuaaucac gccacguc                               acaugaaauuccaauuuugcccuu     g gg    aau uu  a
 |||||||||||||||||||||||||||||||| ||||||||| |||         |||||||    |||||||||||||||||| || |||  || |||||||||| ||||||||                               ||||||||||||||||||||||||     | ||    ||| ||   
 uuaauccccagcaaauuuuuaacCAGGGACAU AGCGAUUAG GAC         ggaacgu    aauuaguaaauuuuaaag ag gag  gg ugaauuagug cggugcgg                               uguauuuuaagguuaaaaugggga     c cc    uua ga  g
g                                U         -   cauuaaaug       aaca                  c  a   ag  g          a        -------------------------------                        ----- -  aagg   a  aa