Stem-loop hbv-mir-B20

Accession

MI0011557

Description

Herpes B virus hbv-mir-B20 precursor miRNA

Sequence

cgccggcggcggccgaGAGUGAGGGUGGCGAGCGCGUggacgcaccucccgacGUGCUGGUUGCCCGCGCUCUCGggcgcggccggacg
(((((((.(((.(((((((((.(((((((.((((((((((......)))..))))))).))))))).))))))))).))).))))).))

Structure

  -     g   g         A       G       --   cg 
cg ccggc gcg ccgaGAGUG GGGUGGC AGCGCGU  gga  c
|| ||||| ||| ||||||||| ||||||| |||||||  |||   
gc ggccg cgc gGCUCUCGC CCCGUUG UCGUGca  ccu  a
  a     g   g         G       G       gc   cc 

Annotation confidence Not enough data

Genome context

NC_004812: 298-386 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from hbv-mir-B20

Mature hbv-miR-B20-5p

• Accession: MIMAT0012172
• Description: Herpes B virus hbv-miR-B20-5p mature miRNA
• Sequence: 17 - GAGUGAGGGUGGCGAGCGCGU - 37
• Evidence: experimental ; Northern [1], Illumina [2]

Mature hbv-miR-B20-3p

• Accession: MIMAT0031158
• Description: Herpes B virus hbv-miR-B20-3p mature miRNA
• Sequence: 54 - GUGCUGGUUGCCCGCGCUCUCG - 75
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19144716
   Discovery of herpes B virus-encoded microRNAs
   "Besecker MI, Harden ME, Li G, Wang XJ, Griffiths A"
   "J Virol (2009) 83:3413-3416


2. PubMed ID: 21543500
   Identification and expression analysis of herpes B virus-encoded small RNAs
   "Amen MA, Griffiths A"
   "J Virol (2011) 85:7296-7311