Stem-loop bna-MIR2111a

Accession

MI0011288

Description

Brassica napus bna-MIR2111a precursor miRNA

Literature search

3 open access papers mention bna-MIR2111a
(4 sentences)

Sequence

gaugacaaguauuggugaggaccgggUAAUCUGCAUCCUGAGGUUUAaagcuugauuauacgcauaacaugccgacgcauauaacuauguguuuuagaauagcuuuuaGUCCUCGGGAUGCGGAUUACCucuuccuuacuauacguacacg
........((((.((((((((..((((((((((((((((((((...((((((.......(((((((..((((....)))).....)))))))........))))))....))))))))))))))))))))..)))))))))))).......

Structure

gaugacaa    u        cc                    -UUU      -ugauuau       ---ac    c 
        guau ggugagga  gggUAAUCUGCAUCCUGAGG    Aaagcu        acgcaua     augc g
        |||| ||||||||  ||||||||||||||||||||    ||||||        |||||||     ||||  
        caua ucauuccu  uCCAUUAGGCGUAGGGCUCC    uuucga        uguguau     uacg a
-gcacaug    -        uc                    UGau      uaagauuu       caaua    c 

Annotation confidence Not enough data

Genome context

EM:AC189208: 23557-23707 [+]

Mature bna-miR2111a-5p

• Accession: MIMAT0011782
• Description: Brassica napus bna-miR2111a-5p mature miRNA
• Sequence: 27 - UAAUCUGCAUCCUGAGGUUUA - 47
• Evidence: experimental ; Illumina [2]

Mature bna-miR2111a-3p

• Accession: MIMAT0011783
• Description: Brassica napus bna-miR2111a-3p mature miRNA
• Sequence: 109 - GUCCUCGGGAUGCGGAUUACC - 129
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19465578
   Identification of nutrient-responsive Arabidopsis and rapeseed microRNAs by comprehensive real-time polymerase chain reaction profiling and small RNA sequencing
   "Pant BD, Musialak-Lange M, Nuc P, May P, Buhtz A, Kehr J, Walther D, Scheible WR"
   "Plant Physiol (2009) 150:1541-1555


2. PubMed ID: 22138974
   Small RNA profiling in two Brassica napus cultivars identifies microRNAs with oil production- and development-correlated expression and new small RNA classes
   "Zhao YT, Wang M, Fu SX, Yang WC, Qi CK, Wang XJ"
   "Plant Physiol (2012) 158:813-823