Stem-loop sbi-MIR1435a

Accession

MI0010931

Description

Sorghum bicolor sbi-MIR1435a precursor miRNA

Sequence

1064 reads, 57.0 reads per million, 49 experiments

guuguauuaaugcacccaucauauuauuuacucuguuccaaauuauagguuaauuuagcuuuuucuuaagucAAACUUUUCUAAUUUUGACaauuuuagaaaauauauuaacaucuacaaguucaaauaaaugcaauaccaacuaccaaacauauuucauggaggauuuaaugaaacaaacuugauguuguagauguugaugcaucuUUCUGUAAACUUGGUCAAAGauaaguuugacuuaggaaaaacuaaagugaccucucauucggaaccuauggaguacuuca
..((((....))))..............(((((((((((.(((...((((((.(((((.(((((((((((((((((((.(((....(((((..(((((((((((.(((((((((((((((..((((.......((.((....((.(((...........)))))....)).))........))))..))))))))))))))).)).)))))).)))....)))))))).)))))))))))))))))))))))).))))))...))).)))))....)))))).....

Structure

guuguauuaaugcacccaucauauuauu      ----     a   uau      a     c                   U   AAUU     --aa   -      -  a               gu    -auaaaug  a  ccaa  a   aaca 
                            uacucu    guucc aau   agguua uuuag uuuuucuuaagucAAACUU UCU    UUGAC    uuu uagaaa au uauuaacaucuacaa  ucaa        ca ua    cu cca    u
                            ||||||    ||||| |||   |||||| ||||| ||||||||||||||||||| |||    |||||    ||| |||||| || |||||||||||||||  ||||        || ||    || |||    a
                            augagg    caagg uua   uccagu aaauc aaaaaggauucaguuugaa aGA    AACUG    AAA GUCUUu ua guaguuguagauguu  aguu        gu au    ga ggu    u
-----------------------acuuc      uauc     c   cuc      g     -                   u   ----     GUUC   U      c  c               gu    caaacaaa  a  uuag  -   acuu 

Annotation confidence Not enough data

Genome context

chr2: 60538637-60538923 [+]

Mature sbi-miR1435a-5p

• Accession: MIMAT0056446
• Description: Sorghum bicolor sbi-miR1435a-5p mature miRNA
• Sequence: 73 - AAACUUUUCUAAUUUUGAC - 91
• Evidence: experimental ; unknown

Mature sbi-miR1435a-3p

• Accession: MIMAT0011391
• Description: Sorghum bicolor sbi-miR1435a-3p mature miRNA
• Sequence: 208 - UUCUGUAAACUUGGUCAAAG - 227
• Evidence: not_experimental

References

1. PubMed ID: 19189423
   The Sorghum bicolor genome and the diversification of grasses
   "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
   "Nature (2009) 457:551-556