Stem-loop sbi-MIR1432

Accession

MI0010930

Description

Sorghum bicolor sbi-MIR1432 precursor miRNA MIR1432

Gene
family

RF04057; MIR1432

Literature search

1 open access papers mention sbi-MIR1432
(9 sentences)

Sequence

129233 reads, 4418.0 reads per million, 50 experiments

gauaggacauaggaggcgagagggacgacgagccguugguuugugggugugcguccuaugCUCAGGAGAGAUGACACCGAcgucggacggaccggucgauccgcgccgugucuguccguccgaagugGGUGUCAUCUCGCCUGAAGCauaggacuuaccagcccaguacaucucccuguuuuca
...........((((((...(((((..(((((((...)))))))(((((((.((((((((((((((.(((((((((((.((.(((((((((((((.((.....))))).....)))))))))).)).))))))))))).)))).)))))))))).)))..))))........))))))))))).

Structure

gauaggacaua      gag     cgacgagccguugguuugu    --   c          -    A           G  g          -----   u  a 
           ggaggc   aggga                   gggu  gug guccuaugCU CAGG GAGAUGACACC Ac ucggacggac     cgg cg u
           ||||||   |||||                   ||||  ||| |||||||||| |||| ||||||||||| || ||||||||||     ||| || c
           cuuuug   ucccu                   cccg  cau caggauaCGA GUCC CUCUACUGUGG ug agccugccug     gcc gc c
----------a      ---     -----------cuacauga    ac   u          A    G           g  a          ucugu   -  g 

Annotation confidence High

Genome context

chr2: 71616755-71616938 [-]

Mature sbi-miR1432-5p

• Accession: MIMAT0011390
• Description: Sorghum bicolor sbi-miR1432-5p mature miRNA
• Sequence: 61 - CUCAGGAGAGAUGACACCGA - 80
• Evidence: experimental ; Illumina [1]

Mature sbi-miR1432-3p

• Accession: MIMAT0056445
• Description: Sorghum bicolor sbi-miR1432-3p mature miRNA
• Sequence: 128 - GGUGUCAUCUCGCCUGAAGC - 147
• Evidence: experimental ; unknown

References

1. PubMed ID: 19189423
   The Sorghum bicolor genome and the diversification of grasses
   "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
   "Nature (2009) 457:551-556