Stem-loop sbi-MIR821e

Accession

MI0010929

Description

Sorghum bicolor sbi-MIR821e precursor miRNA

Sequence

1851 reads, 100.0 reads per million, 50 experiments

aaaaagucauCAAAAUAAAAGUUGUAGAacuagucaagaucucccauuuuuauuuuagucauuuuuucauaugacaaaguaauaguaacauuguucauaaauuuuacauaucucugauauaguuuaugaaacuauaugagagauauguaaaauuuaugaacaauguuacuauuacuuugucagaugaauaaaugaucaaaauaaaaguuguagaucuugaugaguuguacaacuuguauauucauggcuuuaucaacuaaaaucauuua
..((((((((.((.(((.((((((((.((((.((((((((((.(.(((((((((((.(((((((.(((((.((((((((((((((((((((((((((((((((((((((((((((.(((((((((...))))))))).)))))))))))))))))))))))))))))))))))))))))))).))))).))))))).))))))))))).).)))))))))).)))).)))))))).))).)).))))))))..................

Structure

----------------aa        C  A   A        G    a          c c           a       u     a                                            g         a 
                  aaagucau AA AUA AAGUUGUA Aacu gucaagaucu c auuuuuauuuu gucauuu uucau ugacaaaguaauaguaacauuguucauaaauuuuacauaucucu auauaguuu  
                  |||||||| || ||| |||||||| |||| |||||||||| | ||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| u
                  uuucggua uu uau uucaacau uuga uaguucuaga g ugaaaauaaaa uaguaaa aagua acuguuucauuaucauuguaacaaguauuuaaaauguauagaga uauaucaaa  
auuuacuaaaaucaacua        c  a   g        g    g          u u           c       u     g                                            g         g 

Annotation confidence Not enough data

Genome context

chr9: 44973965-44974233 [-]

Mature sbi-miR821e-5p

• Accession: MIMAT0011389
• Description: Sorghum bicolor sbi-miR821e-5p mature miRNA
• Sequence: 11 - CAAAAUAAAAGUUGUAGA - 28
• Evidence: not_experimental

References

1. PubMed ID: 19189423
   The Sorghum bicolor genome and the diversification of grasses
   "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
   "Nature (2009) 457:551-556