Stem-loop sbi-MIR529

Accession

MI0010924

Description

Sorghum bicolor sbi-MIR529 precursor miRNA

Literature search

5 open access papers mention sbi-MIR529
(15 sentences)

Sequence

132756 reads, 3352.0 reads per million, 48 experiments

gggAGAAGAGAGAGAGUACAGCCUUaccauguacacacacuccaaucucaacagucucuuauauaugcugcuguuaccugugagugugaugaaggCUGUACCCUCUCUCUUCUUCu
((((((((((((((.((((((((((..(((.....(((((((((.....((((((..(........)..))))))...)).)))))))))))))))))))).))))))))))))))

Structure

              A          ac   guaca       -  aucuc      cu uua 
gggAGAAGAGAGAG GUACAGCCUU  cau     cacacuc ca     aacagu  c   u
|||||||||||||| ||||||||||  |||     ||||||| ||     ||||||  |    
uCUUCUUCUCUCUC CAUGUCggaa  gua     gugugag gu     uugucg  g   a
              C          --   -----       u  --cca      uc uau 

Annotation confidence High

Genome context

chr4: 44685716-44685831 [+]

Mature sbi-miR529-5p

• Accession: MIMAT0056440
• Description: Sorghum bicolor sbi-miR529-5p mature miRNA
• Sequence: 4 - AGAAGAGAGAGAGUACAGCCUU - 25
• Evidence: experimental ; unknown

Mature sbi-miR529-3p

• Accession: MIMAT0011384
• Description: Sorghum bicolor sbi-miR529-3p mature miRNA
• Sequence: 96 - CUGUACCCUCUCUCUUCUUC - 115
• Evidence: not_experimental

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716