Stem-loop sbi-MIR437w

Accession

MI0010923

Description

Sorghum bicolor sbi-MIR437w precursor miRNA

Literature search

3 open access papers mention sbi-MIR437w
(5 sentences)

Sequence

905 reads, 41.0 reads per million, 50 experiments

uaaaucucucuaauauuuaccaaguuuauagaaaaaugcaucaacauuuccaacaucaaAUUAGUAUCAUUAAAUUCuccgugaaauauauucauagugcauuuacuugaacuuguagauuuuaauaguuuuuuuuuucuaaaaacuuggugAAAGUUAGAGAAGUUUGACUU
(((((.((((((((.((((((((((((.((((((((......((((((......(((.....(((.(((.(((((.(.(.(((((.....))))).).).)))))..))))))....)))...))).)))...)))))))).)))))))))))).)))))))).)))))....

Structure

----     c        a            a        ugcauc   -   uccaac   aaAUU   A   -U     U u c     a 
    uaaau ucucuaau uuuaccaaguuu uagaaaaa      aac auu      auc     AGU UCA  UAAAU C c gugaa u
    ||||| |||||||| |||||||||||| ||||||||      ||| |||      |||     ||| |||  ||||| | | ||||| a
    GUUUG AGAGAUUG AAgugguucaaa aucuuuuu      uug uaa      uag     uca agu  auuua g g uacuu u
UUCA     A        A            a        ---uuu   a   ---uuu   -augu   -   uc     c u a     a 

Annotation confidence Low

Genome context

chr9: 55103062-55103234 [+]

Mature sbi-miR437w-5p

• Accession: MIMAT0056439
• Description: Sorghum bicolor sbi-miR437w-5p mature miRNA
• Sequence: 60 - AUUAGUAUCAUUAAAUUC - 77
• Evidence: experimental ; unknown

Mature sbi-miR437w-3p

• Accession: MIMAT0011383
• Description: Sorghum bicolor sbi-miR437w-3p mature miRNA
• Sequence: 153 - AAAGUUAGAGAAGUUUGACUU - 173
• Evidence: not_experimental

References

1. PubMed ID: 19189423
   The Sorghum bicolor genome and the diversification of grasses
   "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
   "Nature (2009) 457:551-556