Stem-loop sbi-MIR437s

Accession

MI0010919

Description

Sorghum bicolor sbi-MIR437s precursor miRNA

Literature search

3 open access papers mention sbi-MIR437s
(5 sentences)

Sequence

1829 reads, 87.0 reads per million, 50 experiments

aaguCAAACUUCUUUAACUUUGuccagguuuauagaaaaacacucaaacaucuagaauaucagaugaguuucauuagauucuuuaugcaauauauuuugauagagaauuuauuugaacuuguaaaugucaguauauuuucuaaaagcacggucAAAGUUAGAGAAGUUUGACUUag
((((((((((((((((((((((.((..((((.(((((((..(((...((((............((((((((...((((((((((((.(((......)))))))))))))))...))))))))..)))).)))...))))))).))))..)).))))))))))))))))))))))..

Structure

--                      u  ag    a       -ac   caa    cuagaauaucag        cau            g   ua 
  aaguCAAACUUCUUUAACUUUG cc  guuu uagaaaa   acu   acau            augaguuu   uagauucuuuau caa  u
  |||||||||||||||||||||| ||  |||| |||||||   |||   ||||            ||||||||   |||||||||||| |||   
  UUCAGUUUGAAGAGAUUGAAAc gg  cgaa aucuuuu   uga   ugua            uguucaag   auuuaagagaua guu  a
ga                      u  ca    a       aua   --c    ----------aa        uuu            -   uu 

Annotation confidence Medium

Genome context

chr6: 48978172-48978347 [-]

Mature sbi-miR437s-5p

• Accession: MIMAT0056438
• Description: Sorghum bicolor sbi-miR437s-5p mature miRNA
• Sequence: 5 - CAAACUUCUUUAACUUUG - 22
• Evidence: experimental ; unknown

Mature sbi-miR437s-3p

• Accession: MIMAT0011379
• Description: Sorghum bicolor sbi-miR437s-3p mature miRNA
• Sequence: 154 - AAAGUUAGAGAAGUUUGACUU - 174
• Evidence: not_experimental

References

1. PubMed ID: 19189423
   The Sorghum bicolor genome and the diversification of grasses
   "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
   "Nature (2009) 457:551-556