Stem-loop sbi-MIR437p

Accession

MI0010916

Description

Sorghum bicolor sbi-MIR437p precursor miRNA

Literature search

3 open access papers mention sbi-MIR437p
(5 sentences)

Sequence

1869 reads, 90.0 reads per million, 50 experiments

augUCAAACUUCUCUAACACUGACcgaguuuguaggacaaauauauacuagcaucuacaauaccaaauaaaugcacuaucaagagucaagacaaauuucaugguggauuugaugaaacuaauuugauuuuguauguguugguccauuuuuucaauaaacuuggucAAAGUUAGAGAAGUUUGACUUag
..((((((((((((((((..(((((((((((((.(((.((((....((((((((.(((((...(((((((((.((((((...((((........)))).)))))).))))..........)))))...))))).))))))))..)))).))).)))))))))))))..))))))))))))))))....

Structure

--au                AC             a   c    auau        c     uac     ----------    g      caa    caa 
    gUCAAACUUCUCUAAC  UGACcgaguuugu gga aaau    acuagcau uacaa   caaau          aaau cacuau   gagu   g
    ||||||||||||||||  ||||||||||||| ||| ||||    |||||||| |||||   |||||          |||| ||||||   ||||    
    CAGUUUGAAGAGAUUG  Acugguucaaaua cuu uuua    ugguugug auguu   guuua          uuua guggua   uuua   a
gaUU                AA             a   u    --cc        u     uua     aucaaaguag    g      --c    aac 

Annotation confidence Medium

Genome context

chr4: 8535896-8536083 [-]

Mature sbi-miR437p-5p

• Accession: MIMAT0056437
• Description: Sorghum bicolor sbi-miR437p-5p mature miRNA
• Sequence: 4 - UCAAACUUCUCUAACACUGAC - 24
• Evidence: experimental ; unknown

Mature sbi-miR437p-3p

• Accession: MIMAT0011376
• Description: Sorghum bicolor sbi-miR437p-3p mature miRNA
• Sequence: 166 - AAAGUUAGAGAAGUUUGACUU - 186
• Evidence: not_experimental

References

1. PubMed ID: 19189423
   The Sorghum bicolor genome and the diversification of grasses
   "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
   "Nature (2009) 457:551-556