Stem-loop sbi-MIR437n

Accession

MI0010914

Description

Sorghum bicolor sbi-MIR437n precursor miRNA

Literature search

3 open access papers mention sbi-MIR437n
(5 sentences)

Sequence

1452 reads, 78.0 reads per million, 50 experiments

aAGUAAAUUCUCUCCAACUUUGAccaaguuuauagaaaauacaccaacauggcaacaucuacaaaaugaaaugaauuucguaaaaucuauuuugaauauucuugauagugcaauuauuugguauugcugauguuaguauauuuuucuacaaacuugguuAAAGUUAGAGAAGUUUGACUUau
(((((((((.((((.((((((((((((((((.(((((((((.((.((((((((((.(((......((((((....)))))).....(((((..((....))..)))))...........))).))))).))))).)).)).))))))).)))))))))))))))).))))))))).))))..

Structure

--    -     C    C                a       -  c  c     -     c   uacaaaaugaaaugaauuucguaaaau     uu  a 
  aAGU AAAUU UCUC AACUUUGAccaaguuu uagaaaa ua ac aacau ggcaa auc                           cuauu  ga u
  |||| ||||| |||| |||||||||||||||| ||||||| || || ||||| ||||| |||                           |||||  ||  
  UUCA UUUGA AGAG UUGAAAuugguucaaa aucuuuu au ug uugua ucguu ugg                           gauag  cu a
ua    G     -    A                c       u  a  a     g     a   ----------------uuuauuaacgu     uu  u 

Annotation confidence Medium

Genome context

chr3: 6306713-6306894 [-]

Mature sbi-miR437n-5p

• Accession: MIMAT0056436
• Description: Sorghum bicolor sbi-miR437n-5p mature miRNA
• Sequence: 2 - AGUAAAUUCUCUCCAACUUUGA - 23
• Evidence: experimental ; unknown

Mature sbi-miR437n-3p

• Accession: MIMAT0011374
• Description: Sorghum bicolor sbi-miR437n-3p mature miRNA
• Sequence: 160 - AAAGUUAGAGAAGUUUGACUU - 180
• Evidence: not_experimental

References

1. PubMed ID: 19189423
   The Sorghum bicolor genome and the diversification of grasses
   "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
   "Nature (2009) 457:551-556