Stem-loop sbi-MIR437k

Accession

MI0010911

Description

Sorghum bicolor sbi-MIR437k precursor miRNA

Literature search

3 open access papers mention sbi-MIR437k
(5 sentences)

Sequence

2004 reads, 91.0 reads per million, 50 experiments

augucAAACUUCUCUAACUUUGACCAaacuuauagaaaaauacaccaacaauaacaucagcuaguuugauuaauucuccauaaaauaugucuuauuagugcauuuauuugaauuuguagaaguugacauauuuuucuaaaaacuuggUCAAAGUUAGAGAAGUUUGACUuag
..(((((((((((((((((((((((((..((.((((((((((...((((....(((((((.(((....((((((....((((...))))....))))))....))).))))...)))....))))...)))))))))).))..)))))))))))))))))))))))))....

Structure

--au                         ac  a          cac    aaua   ---    c   uuug      ucuc    a 
    gucAAACUUCUCUAACUUUGACCAa  uu uagaaaaaua   caac    aca   ucag uag    auuaau    caua  
    |||||||||||||||||||||||||  || ||||||||||   ||||    |||   |||| |||    ||||||    |||| a
    CAGUUUGAAGAGAUUGAAACUgguu  aa aucuuuuuau   guug    ugu   aguu auu    ugauua    guau  
gauU                         ca  a          aca    aaga   uua    u   uacg      uucu    a 

Annotation confidence Medium

Genome context

chr1: 9804351-9804522 [-]

Mature sbi-miR437k-5p

• Accession: MIMAT0056434
• Description: Sorghum bicolor sbi-miR437k-5p mature miRNA
• Sequence: 6 - AAACUUCUCUAACUUUGACCA - 26
• Evidence: experimental ; unknown

Mature sbi-miR437k-3p

• Accession: MIMAT0011371
• Description: Sorghum bicolor sbi-miR437k-3p mature miRNA
• Sequence: 148 - UCAAAGUUAGAGAAGUUUGACU - 169
• Evidence: not_experimental

References

1. PubMed ID: 19189423
   The Sorghum bicolor genome and the diversification of grasses
   "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
   "Nature (2009) 457:551-556