Stem-loop sbi-MIR437j

Accession

MI0010910

Description

Sorghum bicolor sbi-MIR437j precursor miRNA

Literature search

3 open access papers mention sbi-MIR437j
(5 sentences)

Sequence

1718 reads, 72.0 reads per million, 50 experiments

gucAAACUUCUCUAACUUUGACCAaguuuauagaaaaugcaccaauaguuucaacgucaaauauguuucauuagauucuccaagaaauaugucuugauagcacauuuauuuguacuuguagauguuaauguauuuuuugaaaaacauggUCAAAGUUAGAGAAGUUUGACUu
((((((((((((((((((((((((.((((.(((((((((((..............((((((((((((((..............))))))))).)))))...((((((((........))))))))...)))))))))))..)))).))))))))))))))))))))))))..

Structure

--                        a    -a           ----------------ccaauaguuucaac     -         auuaga 
  gucAAACUUCUCUAACUUUGACCA guuu  uagaaaaugca                              gucaa auauguuuc      u
  |||||||||||||||||||||||| ||||  |||||||||||                              ||||| |||||||||       
  CAGUUUGAAGAGAUUGAAACUggu caaa  guuuuuuaugu                              uaguu uguauaaag      u
uU                        a    aa           aauuguagauguucauguuuauuuacacga     c         aaccuc 

Annotation confidence Medium

Genome context

chr1: 80858050-80858221 [+]

Mature sbi-miR437j-5p

• Accession: MIMAT0056433
• Description: Sorghum bicolor sbi-miR437j-5p mature miRNA
• Sequence: 4 - AAACUUCUCUAACUUUGACCA - 24
• Evidence: experimental ; unknown

Mature sbi-miR437j-3p

• Accession: MIMAT0011370
• Description: Sorghum bicolor sbi-miR437j-3p mature miRNA
• Sequence: 150 - UCAAAGUUAGAGAAGUUUGACU - 171
• Evidence: not_experimental

References

1. PubMed ID: 19189423
   The Sorghum bicolor genome and the diversification of grasses
   "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
   "Nature (2009) 457:551-556