Stem-loop sbi-MIR437f

Accession

MI0010907

Description

Sorghum bicolor sbi-MIR437f precursor miRNA

Literature search

3 open access papers mention sbi-MIR437f
(5 sentences)

Sequence

2545 reads, 120.0 reads per million, 50 experiments

aGUCAAACUUCUCUAACUUUGAaaaaagucuguagaaaaauauauuaacaucuacaauaccaaauaaaugcacuaucaagacauauuucauguuggauuuaaugaaacuaauuuguuguugaucuuggugcacuuuucuauaaacuuggucAAAGUUAGAGAAGUUUGACUUag
((((((((((((((((((((((...((((.(((((((((...((((((.(((.((((((...............(((..(((((.....))))).)))...............)))))).))).))))))...))))))))).))))..))))))))))))))))))))))...

Structure

---                      aaa    c         aua      c   u      ccaaauaaaugcacu   aa     a 
   aGUCAAACUUCUCUAACUUUGA   aagu uguagaaaa   uauuaa auc acaaua               auc  gacau u
   ||||||||||||||||||||||   |||| |||||||||   |||||| ||| ||||||               |||  ||||| u
   UCAGUUUGAAGAGAUUGAAAcu   uuca auaucuuuu   gugguu uag uguugu               uag  uugua u
gaU                      -gg    a         cac      c   u      uuaaucaaaguaauu   -g     c 

Annotation confidence Medium

Genome context

chr1: 64048458-64048631 [-]

Mature sbi-miR437f-5p

• Accession: MIMAT0056430
• Description: Sorghum bicolor sbi-miR437f-5p mature miRNA
• Sequence: 2 - GUCAAACUUCUCUAACUUUGA - 22
• Evidence: experimental ; unknown

Mature sbi-miR437f-3p

• Accession: MIMAT0011367
• Description: Sorghum bicolor sbi-miR437f-3p mature miRNA
• Sequence: 152 - AAAGUUAGAGAAGUUUGACUU - 172
• Evidence: not_experimental

References

1. PubMed ID: 19189423
   The Sorghum bicolor genome and the diversification of grasses
   "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
   "Nature (2009) 457:551-556