Stem-loop sbi-MIR399j

Accession

MI0010900

Description

Sorghum bicolor sbi-MIR399j precursor miRNA

Literature search

3 open access papers mention sbi-MIR399j
(5 sentences)

Sequence

4290 reads, 82.0 reads per million, 43 experiments

aGUGCGGUUCUCCUCUGGCAUGaacgacggcuggagcagcuugccacauggcucggccacggcccuugcuUGCCAAAGGAGAAUUGCCCUGcc
((.(((((((((((.(((((....(((.(((((..((.....(((....)))...))..))))).)))..))))).))))))))))).))...

Structure

---  U           C     UGaa   c     ga  agcuu   a 
   aG GCGGUUCUCCU UGGCA    cga ggcug  gc     gcc c
   || ||||||||||| |||||    ||| |||||  ||     |||  
   UC CGUUAAGAGGA ACCGU    guu ccggc  cg     cgg a
ccG  C           A     --uc   c     ac  --gcu   u 

Annotation confidence High

Genome context

chr4: 9784852-9784944 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from sbi-MIR399j

Mature sbi-miR399j-5p

• Accession: MIMAT0056428
• Description: Sorghum bicolor sbi-miR399j-5p mature miRNA
• Sequence: 2 - GUGCGGUUCUCCUCUGGCAUG - 22
• Evidence: experimental ; unknown

Mature sbi-miR399j-3p

• Accession: MIMAT0011360
• Description: Sorghum bicolor sbi-miR399j-3p mature miRNA
• Sequence: 71 - UGCCAAAGGAGAAUUGCCCUG - 91
• Evidence: not_experimental

References

1. PubMed ID: 19189423
   The Sorghum bicolor genome and the diversification of grasses
   "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
   "Nature (2009) 457:551-556