Stem-loop sbi-MIR396e

Accession

MI0010898

Description

Sorghum bicolor sbi-MIR396e precursor miRNA

Literature search

3 open access papers mention sbi-MIR396e
(8 sentences)

Sequence

3833409 reads, 127795.0 reads per million, 50 experiments

uuUCCACAGGCUUUCUUGAACUGUGaacucguggggguagaaaccuugcuggguuugguucccaugucggauggaaugcuuggcuccucccagcgauucuuccccggccgugagugaauugaauugcgggguuucucgcuucgcucggccggcucuaccuguugAUGGUUCAAGAAAGCCCAUGGAAAc
((((((..((((((((((((((((.(((..(((((((...((((((....))))))....))).....(((.((((((((.((......))))).))))))))((((((..(((((((.......(((((....))))))))))))))))))..))))..))).))))))))))))))))..)))))).

Structure

-      CA                G   uc    ggguagaaaccuugcuggguuugguucccaugucggauggaaugcuuggcuccucccagcgauucuucc      gu       uugaauu     g 
 uuUCCA  GGCUUUCUUGAACUGU aac  gugg                                                                     ccggcc  gagugaa       gcggg u
 ||||||  |||||||||||||||| |||  ||||                                                                     ||||||  |||||||       |||||  
 AAAGGU  CCGAAAGAACUUGGUA uug  cauc                                                                     ggccgg  cucgcuu       cgcuc u
c      AC                g   uc    -------------------------------------------------------------------uc      --       -------     u 

Annotation confidence High

Genome context

chr6: 59881923-59882111 [+]

Mature sbi-miR396e-5p

• Accession: MIMAT0011358
• Description: Sorghum bicolor sbi-miR396e-5p mature miRNA
• Sequence: 3 - UCCACAGGCUUUCUUGAACUGUG - 25
• Evidence: not_experimental

Mature sbi-miR396e-3p

• Accession: MIMAT0056427
• Description: Sorghum bicolor sbi-miR396e-3p mature miRNA
• Sequence: 165 - AUGGUUCAAGAAAGCCCAUGGAAA - 188
• Evidence: experimental ; unknown

References

1. PubMed ID: 19189423
   The Sorghum bicolor genome and the diversification of grasses
   "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
   "Nature (2009) 457:551-556