Stem-loop sbi-MIR396d

Accession

MI0010897

Description

Sorghum bicolor sbi-MIR396d precursor miRNA

Literature search

3 open access papers mention sbi-MIR396d
(12 sentences)

Sequence

3832685 reads, 127761.0 reads per million, 50 experiments

cUCCACAGGCUUUCUUGAACUGUGaacucgaucgcgugcucuuagcuugcuugcucucgcucgcuuuguguugAUGGUUCAAGAAAGUCCUUGGAA
.((((..((((((((((((((((.(((.(((..(((.((....(((......)))...)).))).))).))).))))))))))))))))..)))).

Structure

c    CA                G   u   uc   u  ucuu   uu 
 UCCA  GGCUUUCUUGAACUGU aac cga  gcg gc    agc  g
 ||||  |||||||||||||||| ||| |||  ||| ||    |||   
 AGGU  CUGAAAGAACUUGGUA uug guu  cgc cg    ucg  c
A    UC                g   u   -u   u  -cuc   uu 

Annotation confidence High

Genome context

chr4: 68279979-68280074 [-]

Mature sbi-miR396d-5p

• Accession: MIMAT0011357
• Description: Sorghum bicolor sbi-miR396d-5p mature miRNA
• Sequence: 2 - UCCACAGGCUUUCUUGAACUGUG - 24
• Evidence: not_experimental

Mature sbi-miR396d-3p

• Accession: MIMAT0056426
• Description: Sorghum bicolor sbi-miR396d-3p mature miRNA
• Sequence: 74 - AUGGUUCAAGAAAGUCCUUGGAA - 96
• Evidence: experimental ; unknown

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716