Stem-loop sbi-MIR394b

Accession

MI0010889

Description

Sorghum bicolor sbi-MIR394b precursor miRNA

Literature search

1 open access papers mention sbi-MIR394b
(2 sentences)

Sequence

53786 reads, 2115.0 reads per million, 50 experiments

cUUGGCAUUCUGUCCACCUCCuugccgaucgaucuugcagaaaguuuuuuuuuggAGGUGGGCAUACUGCCAAUGGa
.((((((...(((((((((((........(..(((...)))..).........)))))))))))...))))))....

Structure

---c      UUC           -uugccgau ga   u 
    UUGGCA   UGUCCACCUCC         c  ucu  
    ||||||   |||||||||||         |  ||| g
    AACCGU   ACGGGUGGAgg         g  aga  
aGGU      CAU           uuuuuuuuu aa   c 

Annotation confidence High

Genome context

Unknown

Mature sbi-miR394b-5p

• Accession: MIMAT0011349
• Description: Sorghum bicolor sbi-miR394b-5p mature miRNA
• Sequence: 2 - UUGGCAUUCUGUCCACCUCC - 21
• Evidence: not_experimental

Mature sbi-miR394b-3p

• Accession: MIMAT0056418
• Description: Sorghum bicolor sbi-miR394b-3p mature miRNA
• Sequence: 56 - AGGUGGGCAUACUGCCAAUGG - 76
• Evidence: experimental ; unknown

References

1. PubMed ID: 19189423
   The Sorghum bicolor genome and the diversification of grasses
   "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
   "Nature (2009) 457:551-556