Stem-loop sbi-MIR393b

Accession

MI0010888

Description

Sorghum bicolor sbi-MIR393b precursor miRNA

Literature search

2 open access papers mention sbi-MIR393b
(2 sentences)

Sequence

27835 reads, 1202.0 reads per million, 50 experiments

UCCAAAGGGAUCGCAUUGAUCucaccugccgcccgccgcugcgccugcgcgcgaggggacaagaUCAGUGCAAUCCCUUUGGAA
(((((((((((.((((((((((....((((.((((((((.......))).))).)))).)))))))))))).))))))))))).

Structure

-           C          cacc  -  g  -   -   ug 
 UCCAAAGGGAU GCAUUGAUCu    ug cc cc cgc cgc  c
 ||||||||||| ||||||||||    || || || ||| |||  g
 AGGUUUCCCUA CGUGACUaga    ac gg gg gcg gcg  c
A           A          ----  a  -  a   c   uc 

Annotation confidence High

Genome context

chr6: 60459887-60459970 [-]

Mature sbi-miR393b-5p

• Accession: MIMAT0011348
• Description: Sorghum bicolor sbi-miR393b-5p mature miRNA
• Sequence: 1 - UCCAAAGGGAUCGCAUUGAUC - 21
• Evidence: not_experimental

Mature sbi-miR393b-3p

• Accession: MIMAT0056417
• Description: Sorghum bicolor sbi-miR393b-3p mature miRNA
• Sequence: 65 - UCAGUGCAAUCCCUUUGGAA - 84
• Evidence: experimental ; unknown

References

1. PubMed ID: 19189423
   The Sorghum bicolor genome and the diversification of grasses
   "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
   "Nature (2009) 457:551-556