Stem-loop sbi-MIR390

Accession

MI0010887

Description

Sorghum bicolor sbi-MIR390 precursor miRNA

Literature search

8 open access papers mention sbi-MIR390
(23 sentences)

Sequence

12160 reads, 111.0 reads per million, 50 experiments

ugAAGCUCAGGAGGGAUAGCGCCUaggaaaacacauagauuggagcuagccaugaggagaaagagagagagaggcagcagagcgagaugcaugugaaucucugaaucugcucaucucuuucucuuucucaagguugguucugucuaucaaucugaagCGCUAUCUAUCCUGAGCUCCAc
((.(((((((((.(((((((((...(((......((((((.((((((((((.....((((((((((((((((.(.((((((..(((((........)))))....))))))).))))))))))))))))..))))))))))))))))...)))...))))))))).))))))))).)).

Structure

-  A         G         CUa   aaacac      u          augag                g c      --gc     gca 
 ug AGCUCAGGA GGAUAGCGC   gga      auagau ggagcuagcc     gagaaagagagagaga g agcaga    gagau   u
 || ||||||||| |||||||||   |||      |||||| ||||||||||     |||||||||||||||| | ||||||    |||||    
 AC UCGAGUCCU UCUAUCGCg   ucu      uaucug ucuugguugg     cucuuucucuuucucu c ucgucu    cucua   g
c  C         A         aag   ---aac      -          ---aa                a -      aagu     agu 

Annotation confidence High

Genome context

chr1: 2876710-2876888 [+]

Mature sbi-miR390-5p

• Accession: MIMAT0011347
• Description: Sorghum bicolor sbi-miR390-5p mature miRNA
• Sequence: 3 - AAGCUCAGGAGGGAUAGCGCCU - 24
• Evidence: not_experimental

Mature sbi-miR390-3p

• Accession: MIMAT0056416
• Description: Sorghum bicolor sbi-miR390-3p mature miRNA
• Sequence: 158 - CGCUAUCUAUCCUGAGCUCCA - 178
• Evidence: experimental ; unknown

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716