Stem-loop sbi-MIR171k

Accession

MI0010884

Description

Sorghum bicolor sbi-MIR171k precursor miRNA

Literature search

2 open access papers mention sbi-MIR171k
(3 sentences)

Sequence

21212 reads, 694.0 reads per million, 50 experiments

cgGGAUAUUGGCGCGGUUCAAUCagaaagcuugcgcuccaaagcccaggggcuccacucuuUGAUUGAGCCGUGCCAAUAUCacguc
((.(((((((((((((((((((((((.((...(.(((((........))))).)..)).))))))))))))))))))))))).))..

Structure

--  G                       a  cuu c     aaa 
  cg GAUAUUGGCGCGGUUCAAUCaga ag   g gcucc   g
  || ||||||||||||||||||||||| ||   | |||||    
  gc CUAUAACCGUGCCGAGUUAGUuu uc   c cgggg   c
cu  a                       c  -ac u     acc 

Annotation confidence Medium

Genome context

chr6: 56762480-56762566 [-]

Mature sbi-miR171k-5p

• Accession: MIMAT0056414
• Description: Sorghum bicolor sbi-miR171k-5p mature miRNA
• Sequence: 3 - GGAUAUUGGCGCGGUUCAAUC - 23
• Evidence: experimental ; unknown

Mature sbi-miR171k-3p

• Accession: MIMAT0011344
• Description: Sorghum bicolor sbi-miR171k-3p mature miRNA
• Sequence: 62 - UGAUUGAGCCGUGCCAAUAUC - 82
• Evidence: not_experimental

References

1. PubMed ID: 19189423
   The Sorghum bicolor genome and the diversification of grasses
   "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
   "Nature (2009) 457:551-556