Stem-loop sbi-MIR171j

Accession

MI0010883

Description

Sorghum bicolor sbi-MIR171j precursor miRNA

Literature search

2 open access papers mention sbi-MIR171j
(3 sentences)

Sequence

975 reads, 36.0 reads per million, 38 experiments

gcgagcgaUAUUGGUGAGGUUCAAUCAGAUcaucagaugauguauuuuaaauuuacaugcaugaaggugaauccccagggacUGAUUGAGCCGCGCCAAUAUCacuuc
..(((.((((((((((.(((((((((((.(((((..((((((((.........))))).)))...))))).(((....)))))))))))))).)))))))))).))).

Structure

gc   c          A           ----------A     -ag   -     uuu 
  gag gaUAUUGGUG GGUUCAAUCAG           Ucauc   aug augua   u
  ||| |||||||||| |||||||||||           |||||   ||| |||||   a
  uuc CUAUAACCGC CCGAGUUAGUc           agugg   uac uacau   a
-c   a          G           agggaccccua     aag   g     uua 

Annotation confidence High

Genome context

chr4: 5806673-5806780 [-]

Mature sbi-miR171j-5p

• Accession: MIMAT0056413
• Description: Sorghum bicolor sbi-miR171j-5p mature miRNA
• Sequence: 9 - UAUUGGUGAGGUUCAAUCAGAU - 30
• Evidence: experimental ; unknown

Mature sbi-miR171j-3p

• Accession: MIMAT0011343
• Description: Sorghum bicolor sbi-miR171j-3p mature miRNA
• Sequence: 83 - UGAUUGAGCCGCGCCAAUAUC - 103
• Evidence: not_experimental

References

1. PubMed ID: 19189423
   The Sorghum bicolor genome and the diversification of grasses
   "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
   "Nature (2009) 457:551-556