Stem-loop sbi-MIR171i

Accession

MI0010882

Description

Sorghum bicolor sbi-MIR171i precursor miRNA

Literature search

2 open access papers mention sbi-MIR171i
(3 sentences)

Sequence

34733 reads, 1000.0 reads per million, 50 experiments

gUGUUGGCUCGGCUCACUCAGAagcugaaauaguagugaugaaucuaaaugguagcuauggcguuucUGAUUGAGCCGUGCCAAUAUCuu
((((((((.(((((((.((((((((.(..(((((..(.((........)).)..)))))..))))))))).))))))).))))))))...

Structure

---        U       C        u aa     ag g  gaa 
   gUGUUGGC CGGCUCA UCAGAagc g  auagu  u au   u
   |||||||| ||||||| |||||||| |  |||||  | ||    
   UAUAACCG GCCGAGU AGUcuuug c  uaucg  g ua   c
uuC        U       U        - gg     au g  aau 

Annotation confidence High

Genome context

chr1: 59668493-59668582 [-]

Mature sbi-miR171i-5p

• Accession: MIMAT0056412
• Description: Sorghum bicolor sbi-miR171i-5p mature miRNA
• Sequence: 2 - UGUUGGCUCGGCUCACUCAGA - 22
• Evidence: experimental ; unknown

Mature sbi-miR171i-3p

• Accession: MIMAT0011342
• Description: Sorghum bicolor sbi-miR171i-3p mature miRNA
• Sequence: 68 - UGAUUGAGCCGUGCCAAUAUC - 88
• Evidence: not_experimental

References

1. PubMed ID: 19189423
   The Sorghum bicolor genome and the diversification of grasses
   "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
   "Nature (2009) 457:551-556