Stem-loop sbi-MIR171h

Accession

MI0010881

Description

Sorghum bicolor sbi-MIR171h precursor miRNA

Literature search

3 open access papers mention sbi-MIR171h
(4 sentences)

Sequence

38283 reads, 1289.0 reads per million, 50 experiments

gguaUUGGCGCGCCUCAAUCCGAAGgcguggcugauuuggcauggcagccauguucuuGGAUUGAGCCGCGUCAAUAUCuc
((((((((((((.((((((((((.((((((((((...........)))))))))).)))))))))).))))))))))))..

Structure

--            C          A          auuu 
  gguaUUGGCGCG CUCAAUCCGA Ggcguggcug    g
  |||||||||||| |||||||||| ||||||||||    g
  CUAUAACUGCGC GAGUUAGGuu uuguaccgac    c
cu            C          c          ggua 

Annotation confidence High

Genome context

chr1: 15602519-15602599 [-]

Mature sbi-miR171h-5p

• Accession: MIMAT0056411
• Description: Sorghum bicolor sbi-miR171h-5p mature miRNA
• Sequence: 5 - UUGGCGCGCCUCAAUCCGAAG - 25
• Evidence: experimental ; unknown

Mature sbi-miR171h-3p

• Accession: MIMAT0011341
• Description: Sorghum bicolor sbi-miR171h-3p mature miRNA
• Sequence: 59 - GGAUUGAGCCGCGUCAAUAUC - 79
• Evidence: not_experimental

References

1. PubMed ID: 19189423
   The Sorghum bicolor genome and the diversification of grasses
   "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
   "Nature (2009) 457:551-556