Stem-loop sbi-MIR167i

Accession

MI0010872

Description

Sorghum bicolor sbi-MIR167i precursor miRNA

Literature search

3 open access papers mention sbi-MIR167i
(6 sentences)

Sequence

1199109 reads, 15868.0 reads per million, 50 experiments

agUGAAGCUGCCAGCAUGAUCUAgcuuugguuggcaccauuggcaggcgcccacacaguggccucuuccguguguguagugccgcucuguaccugcaaaucauuguuagAUCAUGCAUGACAGCCUCAUUUc
.((((.((((.((((((((((((((..(((((.(((.....(((.(((((.((((((.(((......)))))))))..)))))))).......))).)))))..)))))))))))).)).)))).))))...

Structure

--a    A    C  -            uu     g   --ccauu   a     -c      g   cc 
   gUGA GCUG CA GCAUGAUCUAgc  ugguu gca       ggc ggcgc  cacaca ugg  u
   |||| |||| || ||||||||||||  ||||| |||       ||| |||||  |||||| |||   
   UACU CGAC GU CGUACUAgauug  acuaa cgu       ucg ccgug  gugugu gcc  c
cUU    C    A  A            uu     a   ccauguc   -     au      -   uu 

Annotation confidence High

Genome context

chr8: 59223214-59223345 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from sbi-MIR167i

Mature sbi-miR167i-5p

• Accession: MIMAT0011332
• Description: Sorghum bicolor sbi-miR167i-5p mature miRNA
• Sequence: 3 - UGAAGCUGCCAGCAUGAUCUA - 23
• Evidence: not_experimental

Mature sbi-miR167i-3p

• Accession: MIMAT0056405
• Description: Sorghum bicolor sbi-miR167i-3p mature miRNA
• Sequence: 110 - AUCAUGCAUGACAGCCUCAUUU - 131
• Evidence: experimental ; unknown

References

1. PubMed ID: 19189423
   The Sorghum bicolor genome and the diversification of grasses
   "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
   "Nature (2009) 457:551-556