Stem-loop sbi-MIR167h

Accession

MI0010871

Description

Sorghum bicolor sbi-MIR167h precursor miRNA

Literature search

3 open access papers mention sbi-MIR167h
(8 sentences)

Sequence

3190724 reads, 47334.0 reads per million, 50 experiments

UGAAGCUGCCAGCAUGAUCUGaaagcauacgaguccuucguuaucaucugaugaaagaaauagaugaucAGAUCAUCUGGCAGUUUCAUU
((((((((((((.(((((((((...(((.....((.(((((((.....))))))).)).....))).)))))))))))))))))))))..

Structure

--            C         aag   acgag  c       u 
  UGAAGCUGCCAG AUGAUCUGa   cau     uc uucguua c
  |||||||||||| |||||||||   |||     || ||||||| a
  ACUUUGACGGUC UACUAGAcu   gua     ag aaguagu u
UU            -         --a   gauaa  a       c 

Annotation confidence High

Genome context

chr1: 76577898-76577987 [-]

Mature sbi-miR167h-5p

• Accession: MIMAT0011331
• Description: Sorghum bicolor sbi-miR167h-5p mature miRNA
• Sequence: 1 - UGAAGCUGCCAGCAUGAUCUG - 21
• Evidence: not_experimental

Mature sbi-miR167h-3p

• Accession: MIMAT0056404
• Description: Sorghum bicolor sbi-miR167h-3p mature miRNA
• Sequence: 70 - AGAUCAUCUGGCAGUUUCAUU - 90
• Evidence: experimental ; unknown

References

1. PubMed ID: 19189423
   The Sorghum bicolor genome and the diversification of grasses
   "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
   "Nature (2009) 457:551-556