Stem-loop sbi-MIR166j

Accession

MI0010869

Description

Sorghum bicolor sbi-MIR166j precursor miRNA

Literature search

5 open access papers mention sbi-MIR166j
(13 sentences)

Sequence

21009874 reads, 560973.0 reads per million, 50 experiments

uguGGAAUGUUGUCUGGUUCUAGGccucucucuacaugcaagcauggauguaguagcagccuacugcaauugcuugcugggaccUCGGACCAGGCUUCAUUCCCCUCa
...((((((..(((((((((.((((((..........(((((((....((((((((....))))))))..))))))).))).))).)))))))))..)))))).....

Structure

--ugu      UU         U   -   cucucuacau       ugga        c 
     GGAAUG  GUCUGGUUC AGG ccu          gcaagca    uguaguag a
     ||||||  ||||||||| ||| |||          |||||||    ||||||||  
     CCUUAC  CGGACCAGG Ucc ggg          cguucgu    acgucauc g
aCUCC      UU         C   a   ---------u       --ua        c 

Annotation confidence High

Genome context

chr1: 79739088-79739195 [-]

Mature sbi-miR166j-5p

• Accession: MIMAT0056402
• Description: Sorghum bicolor sbi-miR166j-5p mature miRNA
• Sequence: 4 - GGAAUGUUGUCUGGUUCUAGG - 24
• Evidence: experimental ; unknown

Mature sbi-miR166j-3p

• Accession: MIMAT0011329
• Description: Sorghum bicolor sbi-miR166j-3p mature miRNA
• Sequence: 85 - UCGGACCAGGCUUCAUUCCCCUC - 107
• Evidence: not_experimental

References

1. PubMed ID: 19189423
   The Sorghum bicolor genome and the diversification of grasses
   "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
   "Nature (2009) 457:551-556