Stem-loop sbi-MIR166i

Accession

MI0010868

Description

Sorghum bicolor sbi-MIR166i precursor miRNA

Literature search

5 open access papers mention sbi-MIR166i
(12 sentences)

Sequence

15421512 reads, 422465.0 reads per million, 50 experiments

GGAAUGUCGUCUGGCGCGAGAccggccggacagucggccggcggcguccucuggaucggacggucUCGGACCAGGCUUCAUUCCCC
((((((..((((((..((((((((.((((.(((..((((....).)))..)))..)))).))))))))..))))))..))))))..

Structure

--      UC      CG        g    -a   uc   - g 
  GGAAUG  GUCUGG  CGAGAccg ccgg  cag  ggc c g
  ||||||  ||||||  |||||||| ||||  |||  ||| |  
  CCUUAC  CGGACC  GCUcuggc ggcu  guc  cug g c
CC      UU      AG        a    ag   uc   c g 

Annotation confidence High

Genome context

chr1: 26881126-26881211 [+]

Mature sbi-miR166i-5p

• Accession: MIMAT0056401
• Description: Sorghum bicolor sbi-miR166i-5p mature miRNA
• Sequence: 1 - GGAAUGUCGUCUGGCGCGAGA - 21
• Evidence: experimental ; unknown

Mature sbi-miR166i-3p

• Accession: MIMAT0011328
• Description: Sorghum bicolor sbi-miR166i-3p mature miRNA
• Sequence: 66 - UCGGACCAGGCUUCAUUCCCC - 86
• Evidence: not_experimental

References

1. PubMed ID: 19189423
   The Sorghum bicolor genome and the diversification of grasses
   "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
   "Nature (2009) 457:551-556