Stem-loop sbi-MIR166h

Accession

MI0010867

Description

Sorghum bicolor sbi-MIR166h precursor miRNA

Literature search

5 open access papers mention sbi-MIR166h
(12 sentences)

Sequence

15472751 reads, 424369.0 reads per million, 50 experiments

aggGGAAUGUUGUCUGGCUCGGGGgcgccgccgcuccgcuccgcuccuuccuucucuggucucucucucuccccuagucuucgcgcgcuuccucaaucuccaucgucucuuccuccuucucuuggagaccagcaggaggacggaggcgggugguguagaucUCGGACCAGGCUUCAUUCCCCcca
.((((((((..((((((.((((((....((((((.((((....((((.((((((((((((((((...........................................................))))))))).))))))).))))))))))))))....)))))).))))))..))))))))...

Structure

--a        UU      C      gcgc      u    uccg    u       -         cucucuccccuagucuucgcgcgcuucc 
   ggGGAAUG  GUCUGG UCGGGG    cgccgc ccgc    cucc uccuucu cuggucucu                            u
   ||||||||  |||||| ||||||    |||||| ||||    |||| ||||||| |||||||||                            c
   CCCCUUAC  CGGACC GGCUcu    guggug ggcg    gagg aggagga gaccagagg                            a
acc        UU      A      agau      -    ----    c       c         uucucuuccuccuucucugcuaccucua 

Annotation confidence High

Genome context

chr10: 60095470-60095654 [-]

Mature sbi-miR166h-5p

• Accession: MIMAT0056400
• Description: Sorghum bicolor sbi-miR166h-5p mature miRNA
• Sequence: 4 - GGAAUGUUGUCUGGCUCGGGG - 24
• Evidence: experimental ; unknown

Mature sbi-miR166h-3p

• Accession: MIMAT0011327
• Description: Sorghum bicolor sbi-miR166h-3p mature miRNA
• Sequence: 162 - UCGGACCAGGCUUCAUUCCCC - 182
• Evidence: not_experimental

References

1. PubMed ID: 19189423
   The Sorghum bicolor genome and the diversification of grasses
   "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
   "Nature (2009) 457:551-556