Stem-loop sbi-MIR156i

Accession

MI0010863

Description

Sorghum bicolor sbi-MIR156i precursor miRNA

Literature search

9 open access papers mention sbi-MIR156i
(24 sentences)

Sequence

8305791 reads, 47665.0 reads per million, 50 experiments

acUGACAGAAGAGAGUGAGCACacagcgggcagacugcaucgaucugaaccgagacgacgcaaguaggaaugaugaugaugaugcagcugcugcugcguGCUCACUUCUCUCUCUGUCAGa
.(((((((((((((((((((((.((((((.(((.(((((((.(((............((....))............))))))))))))))))))).)))))))).))))).)))))))).

Structure

a        -     -        a      g   a       g   ugaaccgagacg  g 
 cUGACAGA AGAGA GUGAGCAC cagcgg cag cugcauc auc            ac c
 |||||||| ||||| |||||||| |||||| ||| ||||||| |||            ||  
 GACUGUCU UCUCU CACUCGug gucguc guc gacguag uag            ug a
a        C     U        c      -   -       -   uaguaguaagga  a 

Annotation confidence High

Genome context

chr7: 57028197-57028317 [+]

Mature sbi-miR156i-5p

• Accession: MIMAT0011323
• Description: Sorghum bicolor sbi-miR156i-5p mature miRNA
• Sequence: 3 - UGACAGAAGAGAGUGAGCAC - 22
• Evidence: not_experimental

Mature sbi-miR156i-3p

• Accession: MIMAT0056398
• Description: Sorghum bicolor sbi-miR156i-3p mature miRNA
• Sequence: 100 - GCUCACUUCUCUCUCUGUCAG - 120
• Evidence: experimental ; unknown

References

1. PubMed ID: 19189423
   The Sorghum bicolor genome and the diversification of grasses
   "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
   "Nature (2009) 457:551-556