Stem-loop sbi-MIR156h

Accession

MI0010862

Description

Sorghum bicolor sbi-MIR156h precursor miRNA

Literature search

8 open access papers mention sbi-MIR156h
(23 sentences)

Sequence

8290009 reads, 47329.0 reads per million, 50 experiments

gUGACAGAAGAGAGUGAGCACacggccgggcgugacggcaccggucaaggaugugccgucgcggccgcguGCUCACUGCUCUUUCUGUCAUCcg
(((((((((((((((((((((.(((((....((((((((((..(((...)))))))))))))))))).))))))))).))).)))))))))...

Structure

---         -   -         a     gggc          cg   a 
   gUGACAGAA GAG AGUGAGCAC cggcc    gugacggcac  guc  
   ||||||||| ||| ||||||||| |||||    ||||||||||  ||| a
   UACUGUCUU CUC UCACUCGug gccgg    cgcugccgug  uag  
gcC         U   G         c     ----          --   g 

Annotation confidence High

Genome context

chr6: 49965689-49965782 [-]

Mature sbi-miR156h-5p

• Accession: MIMAT0011322
• Description: Sorghum bicolor sbi-miR156h-5p mature miRNA
• Sequence: 2 - UGACAGAAGAGAGUGAGCAC - 21
• Evidence: not_experimental

Mature sbi-miR156h-3p

• Accession: MIMAT0056397
• Description: Sorghum bicolor sbi-miR156h-3p mature miRNA
• Sequence: 71 - GCUCACUGCUCUUUCUGUCAUC - 92
• Evidence: experimental ; unknown

References

1. PubMed ID: 19189423
   The Sorghum bicolor genome and the diversification of grasses
   "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
   "Nature (2009) 457:551-556