Accession
MI0010859
Description
Medicago truncatula
mtr-MIR2199 precursor miRNA
Sequence
auaugugcugugcaauugugauccguucuaguguaucauacaauucacagcuuaauauugauuaauuccaguuuauuaauuuggaauauauaucuuuugauagaggccuaggucacuaauuuucuuguuuuaauauauuuaagaaaauaucauaugauaucuucaucuuugcuuucuauaucacuuauauaauuaacauguuagcuacauagaucuaugcaauacaguaauuaaauaucauauuacaaaauaucaaauucauacguucuuuuuccuuuguuuuugguugguugagaaaucacuaccauuuuuuguugauacauauaauuagaaaacaaguauauacauauaucaagauuaaccguauaguuuaauggccuuuauaugaaaauuuuuauguucuuaaacuaaacuggaaauauuugagagcugggauauuuuUGAUACACUAGCACGGAUCACcguugugggucacguaaaaaauaaaugggcaugguggugugu
.((((((.(.((((((.(((((((((.(((((((((((....((((.((((((....((((.((.((((((((((.......((((((((....((((.((((((((((((....)))(((((((((............)))))))))...(((((((((......((((((..(((((....((.((((.......)))).))....))))).....))))...)).......)))))))))........((((((..((................))..))))))(((((((....)))..)))).....(((..((((.................))))..))).......((((((......))))))...)))))))))..)))).....)))))))).....)))))))))).)).)))))))))))))).....))))))))))).))))))))).)))))).).))))))..........(.((((....)))).)
.((((((.(.((((((.(((((((((.(((((((((((....((((.((((((....((((.((.((((((((((.......((((((((....((((.((((((((((((....)))(((((((((............)))))))))...(((((((((......((((((..(((((....((.((((.......)))).))....))))).....))))...)).......)))))))))........((((((..((................))..))))))(((((((....)))..)))).....(((..((((.................))))..))).......((((((......))))))...)))))))))..)))).....)))))))).....)))))))))).)).)))))))))))))).....))))))))))).))))))))).)))))).).))))))..........(.((((....)))).)
Structure
-------------------------a c g u u -uaca a aaua u a uuaauuu -uauc -g -----------------------------------------------------------------------------------------uaggucacuaauuuucuuguuuuaauauauuuaagaaaauauc -cuucau --- ---uu auca u aa
uaugug u ugcaau gugauccgu cuaguguauca auuc cagcuu uuga ua uuccaguuua ggaauaua uuuu auagaggcc auaugauau cu uugc ucuau cu auau u
|||||| | |||||| ||||||||| ||||||||||| |||| |||||| |||| || |||||||||| |||||||| |||| ||||||||| ||||||||| || |||| ||||| || |||| u
augcac g guguug CACUAGGCA GAUCACAUAGU uagg gucgag aguu au aaggucaaau ucuuguau aaag uauuuccgg uauacuaua ga aacg agaua ga ugua a
uguguggugguacggguaaauaaaaa u g c C uuuua - ---- u a --caaau uuuua ua uaauuugauaugccaauuagaacuauauacauauaugaacaaaagauuaauauacauaguuguuuuuuaccaucacuaaagaguugguugguuuuuguuuccuuuuucuugcauacuuaaacuauaaaacau aauuaau cau uaucu cauc u ca
Annotation confidence
Not enough data
Do you think this miRNA is real?
Comments
There is a mismatch between the mature miRNA sequence reported in [1] and the genome-derived hairpin flanking sequence (G17->A). The mature sequence is altered here.
Genome context
chr8: 1337108-1337611 [+]
Database links
Mature mtr-miR2199
| Accession | MIMAT0011319 |
| Description | Medicago truncatula mtr-miR2199 mature miRNA |
| Sequence | 442 - UGAUACACUAGCACGGAUCAC - 462 |
| Evidence |
experimental
454 [1], Northern [1] |
References
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