Stem-loop mtr-MIR2118

Accession

MI0010858

Description

Medicago truncatula mtr-MIR2118 precursor miRNA

Literature search

6 open access papers mention mtr-MIR2118
(17 sentences)

Sequence

807101 reads, 5897.0 reads per million, 111 experiments

agagagagaaagggaaagggugaaagagcuugaggaaguuaugGGAUAUGGGAGGAUCGGUAAAAcagaucuaauucaucugaauugaauaauuucuUUACCGAUUCCACCCAUUCCUAuuauuuccuuuuguuccucucuuuccacucuccucuccau
.(((((.((.((((((((((.(...((((..((((((((.((((((.(((((.((((((((((...(((....(((((.......)))))....)))))))))).))).))))))))))).))))))))..))))).)))))))).)).)))))))...

Structure

--a     a  a  -        u aaa    uu        u      U     A   -       AAc   ucua     uc 
   gagag ga ag ggaaaggg g   gagc  gaggaagu augGGA AUGGG GGA UCGGUAA   aga    auuca  u
   ||||| || || |||||||| |   ||||  |||||||| |||||| ||||| ||| |||||||   |||    |||||  g
   cucuc cu uc ccuuucuc c   cuug  uuccuuua uAUCCU UACCC CCU AGCCAUU   ucu    uaagu  a
uac     -  c  a        u ---    uu        u      -     A   U       ---   uuaa     ua 

Annotation confidence High

Genome context

AC235678.1: 74374-74532 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR2118

Mature mtr-miR2118-5p

• Accession: MIMAT0054794
• Description: Medicago truncatula mtr-miR2118-5p mature miRNA
• Sequence: 44 - GGAUAUGGGAGGAUCGGUAAAA - 65
• Evidence: experimental ; unknown

Mature mtr-miR2118-3p

• Accession: MIMAT0011318
• Description: Medicago truncatula mtr-miR2118-3p mature miRNA
• Sequence: 98 - UUACCGAUUCCACCCAUUCCUA - 119
• Evidence: experimental ; 454 [1], Northern [1]

References

1. PubMed ID: 19555436
   Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families
   "Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R"
   "New Phytol (2009) 184:85-98