miRBase entry: dre-mir-2189

Stem-loop dre-mir-2189


Accession
MI0010851
Description
Danio rerio dre-mir-2189 precursor miRNA

Literature search
1 open access papers mention dre-mir-2189
(6 sentences)

Sequence

5023 reads, 218 reads per million, 11 experiments
ugcacaguuuugaucccgcccaaauugaacacagcugaugcaaccaaucaaauugguaacuauuuuUGAUUGUUUGUAUCAGCUGUGUuuuaguuagggcuucuucgucc
...........((....((((.(((((((((((((((((((((.((((((((.(((...)))..)))))))).)))))))))))))).))))))).))))....))....

Structure
ugcacaguuuu  uccc    a       -              c        -u   u 
           ga    gccc aauugaa cacagcugaugcaa caaucaaa  ugg  
           ||    |||| ||||||| |||||||||||||| ||||||||  ||| a
           cu    cggg uugauuu GUGUCGACUAUGUU GUUAGUuu  auc  
-------ccug  ucuu    a       U              U        uu   a 


Annotation confidence Not enough data
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Genome context
KN150127.1: 17150-17259 [+]

Database links

Mature dre-miR-2189

Accession MIMAT0011311
Description Danio rerio dre-miR-2189 mature miRNA
Sequence 67 - UGAUUGUUUGUAUCAGCUGUGU - 88
Evidence experimental
454 [1]
Database links
Predicted targets

References

  1. PubMed ID: 19397817
    Parallel DNA pyrosequencing unveils new zebrafish microRNAs
    Soares AR, Pereira PM, Santos B, Egas C, Gomes AC, Arrais J, Oliveira JL, Moura GR, Santos MA
    BMC Genomics (2009) 10:195