Stem-loop dre-mir-2187

Accession

MI0010839

Description

Danio rerio dre-mir-2187 precursor miRNA mir-2187

Gene
family

RF03272; mir-2187

Literature search

1 open access papers mention dre-mir-2187
(1 sentences)

Sequence

26 reads, 5 reads per million, 4 experiments

ucugaauugaugauucuggcuUUAAUUAGUAUAGCCUGUUUUAgugaucacaucaauucuUUACAGGCUAUGCUAAUCUAUGccagaauuagcaaugcaugugg
..((.((((.((((((((((.(..(((((((((((((((.....((((...)))).......)))))))))))))))..).)))))))))).)))).)).....

Structure

---uc  a    a          u UA               --UUUAg    c 
     ug auug ugauucuggc U  AUUAGUAUAGCCUGU       ugau  
     || |||| |||||||||| |  |||||||||||||||       |||| a
     ac uaac auuaagaccG A  UAAUCGUAUCGGACA       acua  
ggugu  g    g          U UC               UUucuua    c 

Annotation confidence Not enough data

Genome context

chr17: 19900754-19900857 [-]

Mature dre-miR-2187-5p

• Accession: MIMAT0011296
• Description: Danio rerio dre-miR-2187-5p mature miRNA
• Sequence: 22 - UUAAUUAGUAUAGCCUGUUUUA - 43
• Evidence: experimental ; 454 [1]

Mature dre-miR-2187-3p

• Accession: MIMAT0011297
• Description: Danio rerio dre-miR-2187-3p mature miRNA
• Sequence: 61 - UUACAGGCUAUGCUAAUCUAUG - 82
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19397817
   Parallel DNA pyrosequencing unveils new zebrafish microRNAs
   Soares AR, Pereira PM, Santos B, Egas C, Gomes AC, Arrais J, Oliveira JL, Moura GR, Santos MA
   BMC Genomics (2009) 10:195