Stem-loop gma-MIR172c

Accession

MI0010727

Description

Glycine max gma-MIR172c precursor miRNA

Literature search

36 open access papers mention gma-MIR172c
(237 sentences)

Sequence

aaaucagucacuguuugccgguggagcaucaucaagauucacaagcuuuaggggcauuaauuuguuugaggugguuccuuauugcuccaaaaccaauuagcccuuuugcuaugGGAAUCUUGAUGAUGCUGCAGcagcaauaaaugacuaaua
.....(((((.(..((((.(.((.((((((((((((((((.(((((...((((((..(((((.((((..((.(((........))))).)))).)))))))))))..))).)).)))))))))))))))).)).).))))..).)))))....

Structure

aaauc     c gu    c g  g                a  -   uuu      au     u    ga  u   ucc 
     aguca u  uugc g ug agcaucaucaagauuc ca agc   aggggc  uaauu guuu  gg ggu   u
     ||||| |  |||| | || |||||||||||||||| || |||   ||||||  ||||| ||||  || |||    
     ucagu a  aacg c AC UCGUAGUAGUUCUAAG gu ucg   uucccg  auuaa caaa  cc ucg   u
-auaa     a au    a G  G                G  a   -uu      --     c    -a  -   uua 

Annotation confidence Low

Genome context

chr18: 2979182-2979334 [+]

Mature gma-miR172c

• Accession: MIMAT0011198
• Description: Glycine max gma-miR172c mature miRNA
• Sequence: 114 - GGAAUCUUGAUGAUGCUGCAG - 134
• Evidence: experimental ; cloned [1], Northern [1]

References

1. PubMed ID: 19084500
   Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules
   "Wang Y, Li P, Cao X, Wang X, Zhang A, Li X"
   "Biochem Biophys Res Commun (2009) 378:799-803