Stem-loop mtr-MIR159a

Accession

MI0010696

Description

Medicago truncatula mtr-MIR159a precursor miRNA

Literature search

6 open access papers mention mtr-MIR159a
(33 sentences)

Sequence

105989688 reads, 652096.0 reads per million, 111 experiments

ggggugGAGCUUCCUUUAGUCCAAAUAuggaucuugcuauguugauagagcugcuuagcuaugggucccucaacucuacccaucuuguucuuugugguaguuuuguggcuuccauaucuagggagccuuaucaccuuuaguuuaaucuuucUUUGGAUUGAAGGGAGCUCUAcaucuugcucu
((.((((((((((((((((((((((...((((...((((.(.((((((.(((.(((((.((((((..((.(((..(((((((..........)).)))))..))).))..)))))).))))).))).)))))).)..))))...))))...)))))))))))))))))))))).)).......

Structure

-------  g                      UAu    cuu    -u u      a   g     c      uc  u   cu     -  ucuu 
       gg gugGAGCUUCCUUUAGUCCAAA   ggau   gcua  g ugauag gcu cuuag uauggg  cc caa  cuacc ca    g
       || ||||||||||||||||||||||   ||||   ||||  | |||||| ||| ||||| ||||||  || |||  ||||| ||     
       cu cAUCUCGAGGGAAGUUAGGUUU   ucua   ugau  c acuauu cga ggauc auaccu  gg guu  gaugg gu    u
ucucguu  a                      cuu    auu    uu c      c   g     u      uc  u   uu     u  uucu 

Annotation confidence High

Genome context

AC233685.2: 18309-18491 [-]

Mature mtr-miR159a-5p

• Accession: MIMAT0054792
• Description: Medicago truncatula mtr-miR159a-5p mature miRNA
• Sequence: 7 - GAGCUUCCUUUAGUCCAAAUA - 27
• Evidence: experimental ; unknown

Mature mtr-miR159a-3p

• Accession: MIMAT0011166
• Description: Medicago truncatula mtr-miR159a-3p mature miRNA
• Sequence: 152 - UUUGGAUUGAAGGGAGCUCUA - 172
• Evidence: not_experimental

References

1. PubMed ID: 19353277
   Conserved and novel miRNAs in the legume Phaseolus vulgaris in response to stress
   "Arenas-Huertero C, Perez B, Rabanal F, Blanco-Melo D, De la Rosa C, Estrada-Navarrete G, Sanchez F, Covarrubias AA, Reyes JL"
   "Plant Mol Biol (2009) 70:385-401