Stem-loop mdm-MIR482a

Accession

MI0010695

Description

Malus domestica mdm-MIR482a precursor miRNA

Literature search

5 open access papers mention mdm-MIR482a
(11 sentences)

Sequence

180106 reads, 9150.0 reads per million, 28 experiments

gagaagagggaaagggagauuggagcugcuggaaguuuuaGGAAUGGGCUGUUUGGGAAGAArgaaaauuacaagaauaauugucuugugggguuucUUCCCAAGCCCGCCCAUUCCUAUGauuuccagcuguuccucccuuucccuuguaucuc
((((.((((((((((((....(((((.((((((((((.(((((((((((.((((((((((((......((((((((.......))))))))...))))))))))))..))))))))))).)))))))))).)))))))))))))))))...))))

Structure

    --a            gauu     u          u           -U            rgaaaa        au 
gaga   gagggaaaggga    ggagc gcuggaaguu uaGGAAUGGGC  GUUUGGGAAGAA      uuacaaga  a
||||   ||||||||||||    ||||| |||||||||| |||||||||||  ||||||||||||      ||||||||  a
cucu   uucccuuucccu    ccuug cgaccuuuaG AUCCUUACCCG  CGAACCCUUcuu      gguguucu  u
    aug            ----     u          U           CC            ---ugg        gu 

Annotation confidence High

Genome context

MDC002407.840: 1569-1723 [+]

Mature mdm-miR482a-5p

• Accession: MIMAT0011164
• Description: Malus domestica mdm-miR482a-5p mature miRNA
• Sequence: 41 - GGAAUGGGCUGUUUGGGAAGAA - 62
• Evidence: not_experimental

Mature mdm-miR482a-3p

• Accession: MIMAT0011165
• Description: Malus domestica mdm-miR482a-3p mature miRNA
• Sequence: 98 - UUCCCAAGCCCGCCCAUUCCUAUG - 121
• Evidence: experimental ; miRNAseq [2]

References

1. PubMed ID: 19353277
   Conserved and novel miRNAs in the legume Phaseolus vulgaris in response to stress
   "Arenas-Huertero C, Perez B, Rabanal F, Blanco-Melo D, De la Rosa C, Estrada-Navarrete G, Sanchez F, Covarrubias AA, Reyes JL"
   "Plant Mol Biol (2009) 70:385-401


2. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47