Stem-loop bol-MIR398a

Accession

MI0010667

Description

Brassica oleracea bol-MIR398a precursor miRNA

Literature search

3 open access papers mention bol-MIR398a
(4 sentences)

Sequence

ucucaaaGGAGUGUCAUGAGAACACGGAuccucuuguuucuuuaagauuuccacugaaaccauugaguauUGUGUUCUCAGGUCACCCCUUugaa
..(((((((.(((.(.((((((((((.((.(((..(((((...............)))))....))).)))))))))))).).))).))))))).

Structure

uc       A   U A          G  c   --uu     uuuaag 
  ucaaaGG GUG C UGAGAACACG Au cuc    guuuc      a
  ||||||| ||| | |||||||||| || |||    |||||      u
  aguUUCC CAC G ACUCUUGUGU ua gag    caaag      u
-a       C   U G          -  u   uuac     ucaccu 

Annotation confidence Low

Genome context

Unknown

Mature bol-miR398a-5p

• Accession: MIMAT0010173
• Description: Brassica oleracea bol-miR398a-5p mature miRNA
• Sequence: 8 - GGAGUGUCAUGAGAACACGGA - 28
• Evidence: not_experimental

Mature bol-miR398a-3p

• Accession: MIMAT0010174
• Description: Brassica oleracea bol-miR398a-3p mature miRNA
• Sequence: 71 - UGUGUUCUCAGGUCACCCCUU - 91
• Evidence: not_experimental

References

1. PubMed ID: 18558089
   Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica
   "He XF, Fang YY, Feng L, Guo HS"
   "FEBS Lett (2008) 582:2445-2452