Stem-loop bol-MIR172a

Accession

MI0010665

Description

Brassica oleracea bol-MIR172a precursor miRNA

Literature search

9 open access papers mention bol-MIR172a
(79 sentences)

Sequence

cguuuuuuguaggcgcagcaccaucaagauucacauggaaauugaaaaaucuccuaauuuuuaauuaggguuuugauauguauaugAGAAUCUUGAUGAUGCUGCAUcaacaaccgacg
((((..((((.((.((((((.(((((((((((.((((...((...(((((..(((((((...))))))))))))...))...)))).))))))))))).)))))).)).))))..))))

Structure

    uu    a  c      c           a    gaa  uga     cu       u 
cguu  uugu gg gcagca caucaagauuc caug   au   aaaau  ccuaauu  
||||  |||| || |||||| ||||||||||| ||||   ||   |||||  ||||||| u
gcag  aaca cU CGUCGU GUAGUUCUAAG guau   ua   uuuug  ggauuaa  
    cc    a  A      A           A    aug  uag     --       u 

Annotation confidence Low

Genome context

Unknown

Mature bol-miR172a

• Accession: MIMAT0010171
• Description: Brassica oleracea bol-miR172a mature miRNA
• Sequence: 87 - AGAAUCUUGAUGAUGCUGCAU - 107
• Evidence: not_experimental

References

1. PubMed ID: 18558089
   Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica
   "He XF, Fang YY, Feng L, Guo HS"
   "FEBS Lett (2008) 582:2445-2452