Stem-loop bra-MIR171c

Accession

MI0010658

Description

Brassica rapa bra-MIR171c precursor miRNA

Literature search

7 open access papers mention bra-MIR171c
(10 sentences)

Sequence

gcgagauauuagugcgguucaaucaaauagucguacucuuagcuauuagagaucgguuuuguucgaUUGAGCCGUGCCAAUAUCACGc
(((.((((((.(((((((((((((.((((((((..((((........))))..)))..))))).))))))))))))).)))))).)))

Structure

   a      a             a     --   ua    uag 
gcg gauauu gugcgguucaauc aauag  ucg  cucu   c
||| |||||| ||||||||||||| |||||  |||  ||||    
cGC CUAUAA CGUGCCGAGUUag uuguu  ggc  gaga   u
   A      C             c     uu   ua    uua 

Annotation confidence Low

Genome context

chrA8: 20120996-20121083 [+]

Mature bra-miR171c

• Accession: MIMAT0010163
• Description: Brassica rapa bra-miR171c mature miRNA
• Sequence: 67 - UUGAGCCGUGCCAAUAUCACG - 87
• Evidence: experimental ; cloned [1], Northern [1]

References

1. PubMed ID: 18558089
   Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica
   "He XF, Fang YY, Feng L, Guo HS"
   "FEBS Lett (2008) 582:2445-2452