Stem-loop bra-MIR167d

Accession

MI0010655

Description

Brassica rapa bra-MIR167d precursor miRNA

Literature search

9 open access papers mention bra-MIR167d
(37 sentences)

Sequence

ggcgcaccggcaucugaUGAAGCUGCCAGCAUGAUCUAauuaucuuucuuucucuguugacgauggaaaagacaugaguguugauuagaucauguucgcaguuucacccguugacugucucgcc
((((...(((((.(.(.(((((((((.(((((((((((((((.((((((((.((((((...)))))))))))...)))...))))))))))))))).))))))))).).).)).)))...))))

Structure

    cac   -  u u a         C               --u   ---     c      g 
ggcg   cgg ca c g UGAAGCUGC AGCAUGAUCUAauua   cuu   ucuuu ucuguu  
||||   ||| || | | ||||||||| |||||||||||||||   |||   ||||| |||||| a
ccgc   guc gu g c acuuugacg uuguacuagauuagu   gag   agaaa agguag  
    ucu   a  u c c         c               ugu   uac     -      c 

Annotation confidence Low

Genome context

Unknown

Mature bra-miR167d

• Accession: MIMAT0010160
• Description: Brassica rapa bra-miR167d mature miRNA
• Sequence: 18 - UGAAGCUGCCAGCAUGAUCUA - 38
• Evidence: experimental ; cloned [1], Northern [1]

References

1. PubMed ID: 18558089
   Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica
   "He XF, Fang YY, Feng L, Guo HS"
   "FEBS Lett (2008) 582:2445-2452