Stem-loop lja-MIR396

Accession

MI0010581

Description

Lotus japonicus lja-MIR396 precursor miRNA

Literature search

1 open access papers mention lja-MIR396
(1 sentences)

Sequence

1769099 reads, 135101.0 reads per million, 9 experiments

guccucuuuguauucUUCCACAGCUUUCUUGAACUGcauucaauugcaugcaugccaugacacucuuauuuugcgGUUCAAUAAAGCUGUGGGAAGauauagauaggg
..(((.((((((((.((((((((((((.((((((((((......((((((.....)))).)).........)))))))))).)))))))))))).)))))))).))).

Structure

gu   c        c            C          ---uucaau  -    c 
  ccu uuuguauu UUCCACAGCUUU UUGAACUGca         ug caug a
  ||| |||||||| |||||||||||| ||||||||||         || |||| u
  gga agauauaG AGGGUGUCGAAA AACUUGgcgu         ac guac g
-g   u        A            U          uuuauucuc  a    c 

Annotation confidence High

Genome context

Unknown

Mature lja-miR396-5p

• Accession: MIMAT0010088
• Description: Lotus japonicus lja-miR396-5p mature miRNA
• Sequence: 16 - UUCCACAGCUUUCUUGAACUG - 36
• Evidence: not_experimental

Mature lja-miR396-3p

• Accession: MIMAT0054568
• Description: Lotus japonicus lja-miR396-3p mature miRNA
• Sequence: 76 - GUUCAAUAAAGCUGUGGGAAG - 96
• Evidence: experimental ; unknown

References

1. PubMed ID: 19084500
   Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules
   "Wang Y, Li P, Cao X, Wang X, Zhang A, Li X"
   "Biochem Biophys Res Commun (2009) 378:799-803